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Package Name Access Summary Updated
bioconductor-fastqcleaner public A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files 2024-12-30
bioconductor-amplican public Automated analysis of CRISPR experiments 2024-12-30
bioconductor-cner public CNE Detection and Visualization 2024-12-30
bioconductor-cbioportaldata public Exposes and Makes Available Data from the cBioPortal Web Resources 2024-12-30
bioconductor-shortread public FASTQ input and manipulation 2024-12-30
bioconductor-rhdf5 public R Interface to HDF5 2024-12-30
bioconductor-pwalign public Perform pairwise sequence alignments 2024-12-30
bioconductor-rhdf5filters public HDF5 Compression Filters 2024-12-30
snakemake-storage-plugin-irods public A Snakemake plugin for handling input and output on iRODS 2024-12-30
bioconductor-inspect public Modeling RNA synthesis, processing and degradation with RNA-seq data 2024-12-30
bioconductor-magpie public MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation 2024-12-30
bioconductor-imas public Integrative analysis of Multi-omics data for Alternative Splicing 2024-12-30
bioconductor-glmsparsenet public Network Centrality Metrics for Elastic-Net Regularized Models 2024-12-30
bioconductor-rtcgatoolbox public A new tool for exporting TCGA Firehose data 2024-12-30
bioconductor-eupathdb public Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework. 2024-12-30
bioconductor-ahmassbank public MassBank Annotation Resources for AnnotationHub 2024-12-30
bioconductor-experimenthubdata public Add resources to ExperimentHub 2024-12-30
bioconductor-rgreat public GREAT Analysis - Functional Enrichment on Genomic Regions 2024-12-30
bioconductor-outsplice public Comparison of Splicing Events between Tumor and Normal Samples 2024-12-30
bioconductor-nearbynding public Discern RNA structure proximal to protein binding 2024-12-30
bioconductor-rcgh public Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data 2024-12-30
bioconductor-strandcheckr public Calculate strandness information of a bam file 2024-12-30
bioconductor-fdb.infiniummethylation.hg19 public Compiled HumanMethylation27 and HumanMethylation450 annotations 2024-12-30
bioconductor-fdb.infiniummethylation.hg18 public Compiled HumanMethylation27 and HumanMethylation450 annotations 2024-12-30
bioconductor-proloc public A unifying bioinformatics framework for spatial proteomics 2024-12-30
bioconductor-rcistarget public RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regions 2024-12-30
bioconductor-meshr public Tools for conducting enrichment analysis of MeSH 2024-12-30
bioconductor-gostats public Tools for manipulating GO and microarrays 2024-12-30
bioconductor-ccpromise public PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data 2024-12-30
bioconductor-scclassify public scClassify: single-cell Hierarchical Classification 2024-12-30
bioconductor-sigcheck public Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata 2024-12-30
bioconductor-doppelgangr public Identify likely duplicate samples from genomic or meta-data 2024-12-30
bioconductor-edge public Extraction of Differential Gene Expression 2024-12-30
bioconductor-dexma public Differential Expression Meta-Analysis 2024-12-30
bioconductor-qsmooth public Smooth quantile normalization 2024-12-30
bioconductor-trigger public Transcriptional Regulatory Inference from Genetics of Gene ExpRession 2024-12-30
bioconductor-mbecs public Evaluation and correction of batch effects in microbiome data-sets 2024-12-30
bioconductor-ballgown public Flexible, isoform-level differential expression analysis 2024-12-30
bioconductor-assign public Adaptive Signature Selection and InteGratioN (ASSIGN) 2024-12-30
bioconductor-setools public SEtools: tools for working with SummarizedExperiment 2024-12-30
bioconductor-qsvar public Generate Quality Surrogate Variable Analysis for Degradation Correction 2024-12-30
bioconductor-msprep public Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics Data 2024-12-30
bioconductor-harmonizr public Handles missing values and makes more data available 2024-12-30
bioconductor-genomicplot public Plot profiles of next generation sequencing data in genomic features 2024-12-30
r-leapp public These functions take a gene expression value matrix, a primary covariate vector, an additional known covariates matrix. A two stage analysis is applied to counter the effects of latent variables on the rankings of hypotheses. The estimation and adjustment of latent effects are proposed by Sun, Zhang and Owen (2011). "leapp" is developed in the context of microarray experiments, but may be used as a general tool for high throughput data sets where dependence may be involved. 2024-12-30
bioconductor-bionero public Biological Network Reconstruction Omnibus 2024-12-30
bioconductor-rcas public RNA Centric Annotation System 2024-12-30
bioconductor-knowseq public KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline 2024-12-30
r-smartsva public Introduces a fast and efficient Surrogate Variable Analysis algorithm that captures variation of unknown sources (batch effects) for high-dimensional data sets. The algorithm is built on the 'irwsva.build' function of the 'sva' package and proposes a revision on it that achieves an order of magnitude faster running time while trading no accuracy loss in return. 2024-12-30
bioconductor-paa public PAA (Protein Array Analyzer) 2024-12-30
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