About Anaconda Help Download Anaconda

bioconda / packages / bioconductor-strandcheckr 1.20.0

Calculate strandness information of a bam file

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.20.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-strandcheckr
conda install bioconda/label/gcc7::bioconductor-strandcheckr

Description

This package aims to quantify and remove putative double strand DNA from a strand-specific RNA sample. There are also options and methods to plot the positive/negative proportions of all sliding windows, which allow users to have an idea of how much the sample was contaminated and the appropriate threshold to be used for filtering.


© 2024 Anaconda, Inc. All Rights Reserved. (v4.0.6) Legal | Privacy Policy