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minute
|
public |
MINUTE-ChIP data analysis workflow
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2023-05-30 |
|
surpyvor
|
public |
Evaluating, merging and plotting SV vcf files
|
2023-05-30 |
|
augur
|
public |
Process pathogen genome data for the Nextstrain platform
|
2023-05-30 |
|
bioconductor-chipseqr
|
public |
Identifying Protein Binding Sites in High-Throughput Sequencing Data
|
2023-05-30 |
|
bioconductor-normr
|
public |
Normalization and difference calling in ChIP-seq data
|
2023-05-30 |
|
bioconductor-grohmm
|
public |
GRO-seq Analysis Pipeline
|
2023-05-30 |
|
bioconductor-methylkit
|
public |
DNA methylation analysis from high-throughput bisulfite sequencing results
|
2023-05-30 |
|
control-freec
|
public |
Copy number and genotype annotation from whole genome and whole exome
sequencing data.
|
2023-05-30 |
|
bioconductor-genextender
|
public |
Optimized Functional Annotation Of ChIP-seq Data
|
2023-05-30 |
|
bioconductor-cner
|
public |
CNE Detection and Visualization
|
2023-05-30 |
|
bioconductor-syntenet
|
public |
Inference And Analysis Of Synteny Networks
|
2023-05-30 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2023-05-30 |
|
r-gkmsvm
|
public |
Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.
|
2023-05-29 |
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bwread
|
public |
Read bigwig files quickly into PyRanges or DataFrames
|
2023-05-29 |
|
bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2023-05-29 |
|
medicc2
|
public |
Whole-genome doubling-aware copy number phylogenies for cancer evolution
|
2023-05-29 |
|
bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2023-05-29 |
|
ntlink
|
public |
Genome assembly scaffolder using long reads and minimizers
|
2023-05-29 |
|
bioconductor-batchelor
|
public |
Single-Cell Batch Correction Methods
|
2023-05-29 |
|
freebayes
|
public |
Bayesian haplotype-based polymorphism discovery and genotyping
|
2023-05-29 |
|
bioconductor-transformgampoi
|
public |
Variance Stabilizing Transformation for Gamma-Poisson Models
|
2023-05-29 |
|
r-sew
|
public |
SEW
|
2023-05-29 |
|
r-scopfunctions
|
public |
An R package of functions for single cell -omics analysis.
|
2023-05-29 |
|
bioconductor-densvis
|
public |
Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction
|
2023-05-29 |
|
bioconductor-cbea
|
public |
Competitive Balances for Taxonomic Enrichment Analysis in R
|
2023-05-29 |
|
bioconductor-rfastp
|
public |
An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).
|
2023-05-29 |
|
bioconductor-tigre
|
public |
Transcription factor Inference through Gaussian process Reconstruction of Expression
|
2023-05-29 |
|
batvi
|
public |
Detect viral integrations
|
2023-05-29 |
|
perl-sanger-cgp-battenberg
|
public |
detect subclonality and copy number in matched NGS data
|
2023-05-29 |
|
bioconductor-genefilter
|
public |
genefilter: methods for filtering genes from high-throughput experiments
|
2023-05-29 |
|
perl-sanger-cgp-vcf
|
public |
a set of common perl utilities for generating consistent Vcf headers
|
2023-05-29 |
|
bioconductor-ssnappy
|
public |
Single Sample directioNAl Pathway Perturbation analYsis
|
2023-05-29 |
|
perl-sanger-cgp-vagrent
|
public |
A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences.
|
2023-05-29 |
|
bioconductor-vsn
|
public |
Variance stabilization and calibration for microarray data
|
2023-05-29 |
|
bioconductor-pharmacogx
|
public |
Analysis of Large-Scale Pharmacogenomic Data
|
2023-05-29 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2023-05-29 |
|
bioconductor-gcrma
|
public |
Background Adjustment Using Sequence Information
|
2023-05-29 |
|
bioconductor-profia
|
public |
Preprocessing of FIA-HRMS data
|
2023-05-29 |
|
bioconductor-turbonorm
|
public |
A fast scatterplot smoother suitable for microarray normalization
|
2023-05-29 |
|
viewbs
|
public |
ViewBS is a powerful toolkit for visualization of high-throughput bisulfite sequencing data
|
2023-05-29 |
|
bioconductor-plier
|
public |
Implements the Affymetrix PLIER algorithm
|
2023-05-29 |
|
bioconductor-vsclust
|
public |
Feature-based variance-sensitive quantitative clustering
|
2023-05-29 |
|
bioconductor-makecdfenv
|
public |
CDF Environment Maker
|
2023-05-29 |
|
bioconductor-gopro
|
public |
Find the most characteristic gene ontology terms for groups of human genes
|
2023-05-29 |
|
perl-bio-bigfile
|
public |
Low-level interface to BigWig & BigBed files
|
2023-05-29 |
|
bioconductor-logitt
|
public |
logit-t Package
|
2023-05-29 |
|
bioconductor-classifyr
|
public |
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing
|
2023-05-29 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2023-05-29 |
|
bioconductor-adam
|
public |
ADAM: Activity and Diversity Analysis Module
|
2023-05-29 |
|
bioconductor-metaseqr2
|
public |
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
|
2023-05-29 |