| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fastpmr | public | Calculate pairwise mismatch rates (PMRs) between ancient DNA sequences. | 2026-03-29 |
| mhcflurry | public | MHC Binding Predictor | 2026-03-29 |
| eva-sub-cli | public | EVA Submission Command Line Interface. | 2026-03-29 |
| flexynesis | public | A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. | 2026-03-29 |
| phykit | public | PhyKIT is a UNIX shell toolkit for processing and analyzing phylogenomic data. | 2026-03-29 |
| zipstrain | public | Fast strain-level metagenomics. | 2026-03-29 |
| nomadic | public | Mobile sequencing and analysis in real-time | 2026-03-29 |
| sequana_pipetools | public | A set of tools to help building or using Sequana pipelines | 2026-03-29 |
| r-isva | public | Independent Surrogate Variable Analysis is an algorithm for feature selection in the presence of potential confounding factors (see Teschendorff AE et al 2011, <doi: 10.1093/bioinformatics/btr171>). | 2026-03-29 |
| snakemake-executor-plugin-slurm | public | A Snakemake executor plugin for submitting jobs to a SLURM cluster. | 2026-03-29 |
| altex-be | public | Automatically design sgRNA for exon skipping with many base editors. | 2026-03-29 |
| genomad | public | Identification of mobile genetic elements. | 2026-03-29 |
| last | public | LAST finds & aligns related regions of sequences. | 2026-03-29 |
| nextstrain-cli | public | The Nextstrain command-line interface (CLI). | 2026-03-29 |
| tmb | public | This tool was designed to calculate a Tumor Mutational Burden (TMB) score from a VCF file. | 2026-03-28 |
| pyplink | public | Python module to read binary Plink files. | 2026-03-28 |
| pcne | public | Estimates plasmid copy number from assembled genome. | 2026-03-28 |
| metabolabpy | public | Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis. | 2026-03-28 |
| geofetch | public | Downloads data and metadata from GEO and SRA and creates standard PEPs. | 2026-03-28 |
| alv | public | A console-based sequence alignment viewer | 2026-03-28 |
| rigel | public | Bayesian RNA-seq transcript quantification with joint mRNA, nRNA, and gDNA deconvolution | 2026-03-28 |
| cdskit | public | A toolkit for processing protein-coding sequences (CDS). | 2026-03-28 |
| pdbecif | public | A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB. | 2026-03-28 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2026-03-28 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2026-03-28 |
