bioconda / packages

Package Name Access Summary Updated
minute public MINUTE-ChIP data analysis workflow 2023-05-30
surpyvor public Evaluating, merging and plotting SV vcf files 2023-05-30
augur public Process pathogen genome data for the Nextstrain platform 2023-05-30
bioconductor-chipseqr public Identifying Protein Binding Sites in High-Throughput Sequencing Data 2023-05-30
bioconductor-normr public Normalization and difference calling in ChIP-seq data 2023-05-30
bioconductor-grohmm public GRO-seq Analysis Pipeline 2023-05-30
bioconductor-methylkit public DNA methylation analysis from high-throughput bisulfite sequencing results 2023-05-30
control-freec public Copy number and genotype annotation from whole genome and whole exome sequencing data. 2023-05-30
bioconductor-genextender public Optimized Functional Annotation Of ChIP-seq Data 2023-05-30
bioconductor-cner public CNE Detection and Visualization 2023-05-30
bioconductor-syntenet public Inference And Analysis Of Synteny Networks 2023-05-30
bioconda-repodata-patches public generate tweaks to index metadata, hosted separately from index 2023-05-30
r-gkmsvm public Imports the 'gkmSVM' v2.0 functionalities into R <> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. 2023-05-29
bwread public Read bigwig files quickly into PyRanges or DataFrames 2023-05-29
bioconductor-scran public Methods for Single-Cell RNA-Seq Data Analysis 2023-05-29
medicc2 public Whole-genome doubling-aware copy number phylogenies for cancer evolution 2023-05-29
bioconductor-dropletutils public Utilities for Handling Single-Cell Droplet Data 2023-05-29
ntlink public Genome assembly scaffolder using long reads and minimizers 2023-05-29
bioconductor-batchelor public Single-Cell Batch Correction Methods 2023-05-29
freebayes public Bayesian haplotype-based polymorphism discovery and genotyping 2023-05-29
bioconductor-transformgampoi public Variance Stabilizing Transformation for Gamma-Poisson Models 2023-05-29
r-sew public SEW 2023-05-29
r-scopfunctions public An R package of functions for single cell -omics analysis. 2023-05-29
bioconductor-densvis public Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction 2023-05-29
bioconductor-cbea public Competitive Balances for Taxonomic Enrichment Analysis in R 2023-05-29
bioconductor-rfastp public An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing). 2023-05-29
bioconductor-tigre public Transcription factor Inference through Gaussian process Reconstruction of Expression 2023-05-29
batvi public Detect viral integrations 2023-05-29
perl-sanger-cgp-battenberg public detect subclonality and copy number in matched NGS data 2023-05-29
bioconductor-genefilter public genefilter: methods for filtering genes from high-throughput experiments 2023-05-29
perl-sanger-cgp-vcf public a set of common perl utilities for generating consistent Vcf headers 2023-05-29
bioconductor-ssnappy public Single Sample directioNAl Pathway Perturbation analYsis 2023-05-29
perl-sanger-cgp-vagrent public A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences. 2023-05-29
bioconductor-vsn public Variance stabilization and calibration for microarray data 2023-05-29
bioconductor-pharmacogx public Analysis of Large-Scale Pharmacogenomic Data 2023-05-29
ensembl-vep public Ensembl Variant Effect Predictor 2023-05-29
bioconductor-gcrma public Background Adjustment Using Sequence Information 2023-05-29
bioconductor-profia public Preprocessing of FIA-HRMS data 2023-05-29
bioconductor-turbonorm public A fast scatterplot smoother suitable for microarray normalization 2023-05-29
viewbs public ViewBS is a powerful toolkit for visualization of high-throughput bisulfite sequencing data 2023-05-29
bioconductor-plier public Implements the Affymetrix PLIER algorithm 2023-05-29
bioconductor-vsclust public Feature-based variance-sensitive quantitative clustering 2023-05-29
bioconductor-makecdfenv public CDF Environment Maker 2023-05-29
bioconductor-gopro public Find the most characteristic gene ontology terms for groups of human genes 2023-05-29
perl-bio-bigfile public Low-level interface to BigWig & BigBed files 2023-05-29
bioconductor-logitt public logit-t Package 2023-05-29
bioconductor-classifyr public A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing 2023-05-29
mashtree public Create a tree using Mash distances 2023-05-29
bioconductor-adam public ADAM: Activity and Diversity Analysis Module 2023-05-29
bioconductor-metaseqr2 public An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms 2023-05-29

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