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shapeit5
|
public |
Fast and accurate method for estimation of haplotypes (phasing)
|
2025-02-19 |
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egap
|
public |
EGAP pipeline for genome assembly and QC analysis
|
2025-02-19 |
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perl-template-toolkit
|
public |
Comprehensive template processing system.
|
2025-02-19 |
|
tb-profiler
|
public |
Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from sequencing data
|
2025-02-19 |
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mlstdb
|
public |
A Python package to update and manage the MLST database for the MLST tool.
|
2025-02-19 |
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autobigs-engine
|
public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
|
2025-02-19 |
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hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
|
2025-02-19 |
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vcfexpress
|
public |
expressions on VCFs
|
2025-02-19 |
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libssw
|
public |
An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications.
|
2025-02-19 |
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consent
|
public |
Scalable long read self-correction and assembly polishing with multiple sequence alignment
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2025-02-19 |
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bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2025-02-19 |
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quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2025-02-19 |
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hmftools-cuppa
|
public |
Predict tissue of origin for tumor samples from WGTS data.
|
2025-02-19 |
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perl-specio
|
public |
Type constraints and coercions for Perl
|
2025-02-19 |
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genmap
|
public |
Ultra-fast computation of genome mappability.
|
2025-02-19 |
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pupmapper
|
public |
Tool & python package for calculating genome wide pileup mappability.
|
2025-02-19 |
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bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-02-19 |
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seqlib
|
public |
C++ interface to HTSlib, BWA-MEM and Fermi.
|
2025-02-18 |
|
genomad
|
public |
Identification of mobile genetic elements.
|
2025-02-18 |
|
rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-02-18 |
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kraken2
|
public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
|
2025-02-18 |
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flexynesis
|
public |
A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction.
|
2025-02-18 |
|
muat
|
public |
A package for Mutation Attention Tool
|
2025-02-18 |
|
gappa
|
public |
Genesis Applications for Phylogenetic Placement Analysis
|
2025-02-18 |
|
im2deep
|
public |
Framework for prediction of collisional cross-section of peptides.
|
2025-02-18 |
|
clipkit
|
public |
Alignment trimming software for phylogenetics.
|
2025-02-18 |
|
gencove
|
public |
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.
|
2025-02-18 |
|
icescreen
|
public |
ICEscreen detects and annotates ICEs (Integrative and Conjugative Elements) and IMEs (Integrative and Mobilizable Elements) in Bacillota genomes.
|
2025-02-18 |
|
pybiolib
|
public |
BioLib Python Client
|
2025-02-18 |
|
gw
|
public |
View genomic sequencing data and vcf files
|
2025-02-18 |
|
ensembl-utils
|
public |
Ensembl Python general-purpose utils
|
2025-02-18 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2025-02-18 |
|
perl-error
|
public |
Error/exception handling in an OO-ish way
|
2025-02-18 |
|
nextclade
|
public |
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
|
2025-02-18 |
|
hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
|
2025-02-18 |
|
hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-02-18 |
|
hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2025-02-18 |
|
hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2025-02-18 |
|
hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2025-02-18 |
|
hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2025-02-18 |
|
mutalyzer_hgvs_parser
|
public |
Mutalyzer HGVS variant description parser
|
2025-02-18 |
|
seqnado
|
public |
Pipelines for genomics analysis
|
2025-02-18 |
|
met4j
|
public |
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks
|
2025-02-17 |
|
genin2
|
public |
Genin2 is a lightining-fast bioinformatic tool to predict genotypes for H5 viruses belonging to the European clade 2.3.4.4b
|
2025-02-17 |
|
souporcell
|
public |
Clustering scRNAseq by genotypes.
|
2025-02-17 |
|
skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2025-02-17 |
|
fastahack
|
public |
No Summary
|
2025-02-17 |
|
wgatools
|
public |
A Rust library and tools for whole genome alignment files.
|
2025-02-17 |
|
metafx
|
public |
MetaFX (METAgenomic Feature eXtraction) is a library for feature extraction from whole-genome metagenome sequencing data and classification of groups of samples.
|
2025-02-17 |
|
s4pred
|
public |
Accurate prediction of a protein's secondary structure from its amino acid sequence
|
2025-02-17 |
