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parascopy
|
public |
Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing.
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2025-01-07 |
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gfaffix
|
public |
GFAffix identifies and collapses walk-preserving shared affixes in variation graphs
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2025-01-07 |
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last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-01-07 |
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teloscope
|
public |
A telomere annotation tools for genome assemblies
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2025-01-07 |
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biscuit
|
public |
A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data.
|
2025-01-07 |
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splitcode
|
public |
Flexible parsing, interpretation, and editing of technical sequences
|
2025-01-07 |
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revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2025-01-07 |
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simpleaf
|
public |
A rust framework to make using alevin-fry even simpler.
|
2025-01-07 |
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suchtree
|
public |
A python library for doing fast, thread-safe computations on phylogenetic trees
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2025-01-07 |
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mashtree
|
public |
Create a tree using Mash distances
|
2025-01-07 |
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mumemto
|
public |
Finding maximal unique matches across pangenomes
|
2025-01-07 |
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annosine2
|
public |
AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes.
|
2025-01-07 |
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seqerakit
|
public |
Automate creation of Seqera Platform resources
|
2025-01-07 |
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snapatac2
|
public |
SnapATAC2: Single-cell epigenomics analysis pipeline.
|
2025-01-07 |
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selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
|
2025-01-07 |
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smcpp
|
public |
SMC++ infers population history from whole-genome sequence data.
|
2025-01-07 |
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dfast
|
public |
DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline
|
2025-01-07 |
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vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-01-07 |
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jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-01-07 |
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centrifuger
|
public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
|
2025-01-07 |
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metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2025-01-07 |
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stacks
|
public |
Stacks is a software pipeline for building loci from short-read sequences.
|
2025-01-07 |
|
sdm
|
public |
sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication
|
2025-01-07 |
|
strobealign
|
public |
Align short reads using dynamic seed size with strobemers
|
2025-01-07 |
|
proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
|
2025-01-07 |
|
gzrt
|
public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover.
|
2025-01-07 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-01-07 |
|
r-oncopharmadb
|
public |
Targeted and non-targeted anticancer drugs and drug regimens
|
2025-01-07 |
|
methylmap
|
public |
Plotting tool for population-scale nucleotide modifications
|
2025-01-07 |
|
seq2squiggle
|
public |
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
|
2025-01-07 |
|
pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
|
2025-01-07 |
|
megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-01-07 |
|
caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
|
2025-01-07 |
|
binette
|
public |
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
|
2025-01-07 |
|
divvier
|
public |
A program for removing MSA uncertainty
|
2025-01-07 |
|
kneaddata
|
public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
|
2025-01-07 |
|
wgdi
|
public |
Whole Genome Duplication Identification.
|
2025-01-07 |
|
nanovar
|
public |
Structural variant caller using low-depth long reads
|
2025-01-07 |
|
plothic
|
public |
Plot Whole genome Hi-C contact matrix heatmap
|
2025-01-07 |
|
stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-01-07 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-01-07 |
|
bioconductor-zenith
|
public |
Gene set analysis following differential expression using linear (mixed) modeling with dream
|
2025-01-06 |
|
fasten
|
public |
Perform random operations on fastq files, using unix streaming. Secure your analysis with Fasten!
|
2025-01-06 |
|
bioconductor-variancepartition
|
public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
|
2025-01-06 |
|
unifeb
|
public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
|
2025-01-06 |
|
bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-01-06 |
|
strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2025-01-06 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-06 |
|
ipyrad
|
public |
Interactive assembly and analysis of RAD-seq data sets.
|
2025-01-06 |
|
resistify
|
public |
A resistance gene annotation tool
|
2025-01-06 |
