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r-ukbrapr
|
public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
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2025-04-07 |
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ngmerge
|
public |
Merging paired-end reads and removing sequencing adapters.
|
2025-04-07 |
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samshee
|
public |
A schema-agnostic parser and writer for illumina sample sheets v2.
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2025-04-07 |
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mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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2025-04-07 |
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elastic-blast
|
public |
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective.
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2025-04-07 |
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sr2silo
|
public |
Short-read to SILO format converter.
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2025-04-07 |
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aliceasm
|
public |
Efficient HiFi genome assembler producing haplotype-separated assemblies
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2025-04-07 |
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derip2
|
public |
Predict ancestral sequence of fungal repeat elements by correcting for RIP-like mutations in multi-sequence DNA alignments.
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2025-04-07 |
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tirmite
|
public |
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
|
2025-04-07 |
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pretextgraph
|
public |
Embeds bedgraph data into Pretext contact maps.
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2025-04-07 |
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clam
|
public |
clam is a tool for classification of callable loci intervals, and accurate estimation of population genetic statistics.
|
2025-04-07 |
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rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-04-07 |
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bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-04-07 |
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veryfasttree
|
public |
VeryFastTree -- speeding up the estimation of phylogenies for large alignments through parallelization and vectorization strategies.
|
2025-04-06 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-04-06 |
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genome2tree
|
public |
A pipeline to build phylogenetic trees from genome comparisons
|
2025-04-06 |
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perl-postscript-simple
|
public |
Produce PostScript files from Perl.
|
2025-04-06 |
|
met4j
|
public |
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks
|
2025-04-06 |
|
vcfx
|
public |
VCFX: A Comprehensive VCF Manipulation Toolkit
|
2025-04-06 |
|
pysctransform
|
public |
Python package to perform normalization and variance-stabilization of single-cell data.
|
2025-04-06 |
|
t1k
|
public |
T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with RNA-seq, WGS or WES data.
|
2025-04-06 |
|
gapmm2
|
public |
gapmm2: gapped alignment using minimap2.
|
2025-04-06 |
|
dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2025-04-06 |
|
grampa
|
public |
GRAMPA is a program to identify and place polyploidy events on a phylogeny and to count duplications and losses in the presence of polyploidy.
|
2025-04-06 |
|
fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2025-04-06 |
|
fgbio-minimal
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2025-04-06 |
|
r-acidgenomes
|
public |
Toolkit for downloading and processing genome annotations.
|
2025-04-06 |
|
metaspace2020
|
public |
Python library for connecting to the METASPACE platform.
|
2025-04-06 |
|
vcfdist
|
public |
vcfdist: benchmarking phased germline variant calls in VCF format
|
2025-04-06 |
|
ogtfinder
|
public |
OGTFinder is an optimal growth temperature prediction tool for prokaryotes using proteome-derived features.
|
2025-04-05 |
|
ddqc
|
public |
Biology-centered data-driven quality control for scRNA-seq.
|
2025-04-05 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2025-04-05 |
|
pantax
|
public |
Strain-level metagenomic profiling using pangenome graphs with PanTax
|
2025-04-04 |
|
plasann
|
public |
A tool for plasmid annotation and visualization
|
2025-04-04 |
|
nanomonsv
|
public |
Python tools for detecting structural variation from nanopore sequence data.
|
2025-04-04 |
|
cnasim
|
public |
Improved simulation of single-cell copy number profiles and DNA-seq data from tumors
|
2025-04-04 |
|
ngmaster
|
public |
In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST) and Neisseria gonorrhoeae sequence typing for antimicrobial resistance (NG-STAR).
|
2025-04-04 |
|
changeo
|
public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
|
2025-04-04 |
|
yleaf-pipelines
|
public |
Yleaf-pipelines - A pipeline-optimized version of Yleaf, a tool for Y-chromosome haplogroup prediction.
|
2025-04-04 |
|
gseapy
|
public |
Gene Set Enrichment Analysis in Python.
|
2025-04-04 |
|
portcullis
|
public |
Splice junction analysis and filtering from BAM files
|
2025-04-04 |
|
pyfastaq
|
public |
Script to manipulate FASTA and FASTQ files, plus API for developers.
|
2025-04-04 |
|
oakvar
|
public |
OakVar - Genomic Variant Analysis Platform
|
2025-04-04 |
|
bohra
|
public |
Pipeline for analysing Illumina data for microbiological public health.
|
2025-04-04 |
|
perl-pod-usage
|
public |
Print a usage message from embedded pod documentation.
|
2025-04-04 |
|
svtopo
|
public |
Complex structural variant visualization for HiFi sequencing data: extraction tool
|
2025-04-04 |
|
doubletdetection
|
public |
Method to detect and enable removal of doublets from single-cell RNA-sequencing.
|
2025-04-04 |
|
sopa
|
public |
Spatial-omics pipeline and analysis.
|
2025-04-04 |
|
ezcharts
|
public |
eCharts plotting API.
|
2025-04-04 |
|
el_gato
|
public |
Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies.
|
2025-04-04 |
