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perl-gd
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public |
Perl interface to the gd2 graphics library
|
2026-01-06 |
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bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2025-12-16 |
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htslib
|
public |
C library for high-throughput sequencing data formats.
|
2025-12-16 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-12-16 |
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gunc
|
public |
Python package for detection of chimerism and contamination in prokaryotic genomes.
|
2025-12-13 |
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busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2025-12-02 |
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flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2025-11-28 |
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kraken2
|
public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
|
2025-11-25 |
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hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2025-11-21 |
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bowtie2
|
public |
A fast and sensitive gapped read aligner.
|
2025-11-20 |
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stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-11-13 |
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altamisa
|
public |
Alternative Python API for accessing ISA-tab files.
|
2025-11-13 |
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snakedeploy
|
public |
Helper for deploying published Snakemake pipelines.
|
2025-11-03 |
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bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2025-10-31 |
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metawrap-mg
|
public |
MetaWRAP is a pipeline for genome-resolved metagenomic data analysis
|
2025-10-30 |
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gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2025-10-20 |
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genometools-genometools
|
public |
GenomeTools genome analysis system.
|
2025-10-06 |
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trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2025-09-18 |
|
trimmomatic
|
public |
A flexible read trimming tool for Illumina NGS data.
|
2025-08-28 |
|
perl-datetime
|
public |
A date and time object for Perl.
|
2025-08-15 |
|
perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO.
|
2025-07-24 |
|
svtopovz
|
public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
|
2025-07-22 |
|
htseq
|
public |
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
|
2025-07-21 |
|
gffcompare
|
public |
GffCompare by Geo Pertea.
|
2025-07-15 |
|
bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-06-27 |
