bioconda / packages / bioconductor-hdf5array 1.22.0

HDF5 backend for DelayedArray objects

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.22.0
  • osx-64  v1.22.0
  • noarch  v1.10.1
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-hdf5array
conda install -c bioconda/label/gcc7 bioconductor-hdf5array
conda install -c bioconda/label/broken bioconductor-hdf5array
conda install -c bioconda/label/cf201901 bioconductor-hdf5array

Description

Implement the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.


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