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bioconductor-hdf5array

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HDF5 datasets as array-like objects in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-hdf5array

Usage Tracking

1.34.0
1.30.0
1.28.1
1.26.0
1.22.1
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Total downloads: 0

Description

The HDF5Array package is an HDF5 backend for DelayedArray objects. It implements the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.

About

Summary

HDF5 datasets as array-like objects in R

Information Last Updated

Apr 22, 2025 at 15:28

License

Artistic-2.0

Total Downloads

371.1K

Platforms

Linux 64 Version: 1.34.0
macOS 64 Version: 1.34.0
noarch Version: 1.10.1
Linux aarch64 Version: 1.34.0
macOS arm64 Version: 1.34.0