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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
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2025-01-08 |
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bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-01-08 |
|
perl-config-general
|
public |
Generic Config Module
|
2025-01-08 |
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snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-01-08 |
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last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-01-07 |
|
mashtree
|
public |
Create a tree using Mash distances
|
2025-01-07 |
|
selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
|
2025-01-07 |
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vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-01-07 |
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stacks
|
public |
Stacks is a software pipeline for building loci from short-read sequences.
|
2025-01-07 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-01-07 |
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megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-01-07 |
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kneaddata
|
public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
|
2025-01-07 |
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stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-01-07 |
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bioconductor-variancepartition
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public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
|
2025-01-06 |
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bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-01-06 |
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bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-06 |
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bioconductor-ideal
|
public |
Interactive Differential Expression AnaLysis
|
2025-01-06 |
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bioconductor-isoformswitchanalyzer
|
public |
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
|
2025-01-05 |
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bioconductor-interest
|
public |
Intron-Exon Retention Estimator
|
2025-01-04 |
|
bioconductor-meshes
|
public |
MeSH Enrichment and Semantic analyses
|
2025-01-04 |
|
bioconductor-rnaseqsamplesize
|
public |
RnaSeqSampleSize
|
2025-01-04 |
|
bioconductor-medips
|
public |
DNA IP-seq data analysis
|
2025-01-04 |
|
bioconductor-clusterprofiler
|
public |
A universal enrichment tool for interpreting omics data
|
2025-01-04 |
|
bioconductor-mineica
|
public |
Analysis of an ICA decomposition obtained on genomics data
|
2025-01-04 |
|
bioconductor-chipseeker
|
public |
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
|
2025-01-04 |
|
bioconductor-gsreg
|
public |
Gene Set Regulation (GS-Reg)
|
2025-01-04 |
|
bioconductor-genvisr
|
public |
Genomic Visualizations in R
|
2025-01-04 |
|
bioconductor-reactomepa
|
public |
Reactome Pathway Analysis
|
2025-01-04 |
|
bioconductor-seqgsea
|
public |
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
|
2025-01-04 |
|
bioconductor-enrichplot
|
public |
Visualization of Functional Enrichment Result
|
2025-01-04 |
|
bioconductor-teqc
|
public |
Quality control for target capture experiments
|
2025-01-03 |
|
bioconductor-rfpred
|
public |
Assign rfPred functional prediction scores to a missense variants list
|
2025-01-03 |
|
bioconductor-tracktables
|
public |
Build IGV tracks and HTML reports
|
2025-01-03 |
|
bioconductor-vegamc
|
public |
VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer
|
2025-01-03 |
|
bioconductor-riboseqr
|
public |
Analysis of sequencing data from ribosome profiling experiments
|
2025-01-03 |
|
bioconductor-ssviz
|
public |
A small RNA-seq visualizer and analysis toolkit
|
2025-01-03 |
|
bioconductor-signer
|
public |
Empirical Bayesian approach to mutational signature discovery
|
2025-01-03 |
|
bioconductor-cager
|
public |
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
|
2025-01-03 |
|
bioconductor-tweedeseq
|
public |
RNA-seq data analysis using the Poisson-Tweedie family of distributions
|
2025-01-03 |
|
bioconductor-scan.upc
|
public |
Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)
|
2025-01-03 |
|
bioconductor-batchqc
|
public |
Batch Effects Quality Control Software
|
2025-01-03 |
|
bioconductor-egsea
|
public |
Ensemble of Gene Set Enrichment Analyses
|
2025-01-03 |
|
bioconductor-customprodb
|
public |
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
|
2025-01-03 |
|
perl-xml-libxml
|
public |
Interface to Gnome libxml2 xml parsing and DOM library
|
2025-01-03 |
|
bioconductor-badregionfinder
|
public |
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
|
2025-01-03 |
|
bioconductor-epigenomix
|
public |
Epigenetic and gene transcription data normalization and integration with mixture models
|
2025-01-03 |
|
bioconductor-arrayqualitymetrics
|
public |
Quality metrics report for microarray data sets
|
2025-01-03 |
|
bioconductor-flowsom
|
public |
Using self-organizing maps for visualization and interpretation of cytometry data
|
2025-01-03 |
|
bioconductor-cnvpanelizer
|
public |
Reliable CNV detection in targeted sequencing applications
|
2025-01-03 |
