BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
conda install -c bioconda bioconductor-badregionfinder
conda install -c bioconda/label/gcc7 bioconductor-badregionfinder
conda install -c bioconda/label/cf201901 bioconductor-badregionfinder
BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.