Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
conda install -c bioconda bioconductor-isoformswitchanalyzer
conda install -c bioconda/label/gcc7 bioconductor-isoformswitchanalyzer
conda install -c bioconda/label/cf201901 bioconductor-isoformswitchanalyzer
IsoformSwitchAnalyzeR enables identification and analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, Cufflinks/Cuffdiff, RSEM etc.