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bioconda / packages / bioconductor-isoformswitchanalyzer 2.2.0

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v2.2.0
  • linux-64 v2.2.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-isoformswitchanalyzer
conda install bioconda/label/cf201901::bioconductor-isoformswitchanalyzer
conda install bioconda/label/gcc7::bioconductor-isoformswitchanalyzer

Description

Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.


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