bioconda / packages / bioconductor-seqgsea 1.34.0

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.20.0
  • osx-64  v1.20.0
  • noarch  v1.34.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-seqgsea
conda install -c bioconda/label/gcc7 bioconductor-seqgsea
conda install -c bioconda/label/cf201901 bioconductor-seqgsea


The package generally provides methods for gene set enrichment analysis of high-throughput RNA-Seq data by integrating differential expression and splicing. It uses negative binomial distribution to model read count data, which accounts for sequencing biases and biological variation. Based on permutation tests, statistical significance can also be achieved regarding each gene's differential expression and splicing, respectively.

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