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seq2squiggle
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public |
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
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2025-01-07 |
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pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
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2025-01-07 |
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megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-01-07 |
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caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
|
2025-01-07 |
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binette
|
public |
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
|
2025-01-07 |
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divvier
|
public |
A program for removing MSA uncertainty
|
2025-01-07 |
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kneaddata
|
public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
|
2025-01-07 |
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wgdi
|
public |
Whole Genome Duplication Identification.
|
2025-01-07 |
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nanovar
|
public |
Structural variant caller using low-depth long reads
|
2025-01-07 |
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plothic
|
public |
Plot Whole genome Hi-C contact matrix heatmap
|
2025-01-07 |
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stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-01-07 |
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bioconductor-zenith
|
public |
Gene set analysis following differential expression using linear (mixed) modeling with dream
|
2025-01-06 |
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fasten
|
public |
Perform random operations on fastq files, using unix streaming. Secure your analysis with Fasten!
|
2025-01-06 |
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bioconductor-variancepartition
|
public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
|
2025-01-06 |
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unifeb
|
public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
|
2025-01-06 |
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bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-01-06 |
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strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2025-01-06 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-06 |
|
ipyrad
|
public |
Interactive assembly and analysis of RAD-seq data sets.
|
2025-01-06 |
|
resistify
|
public |
A resistance gene annotation tool
|
2025-01-06 |
|
artic
|
public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
|
2025-01-06 |
|
bioconductor-ideal
|
public |
Interactive Differential Expression AnaLysis
|
2025-01-06 |
|
bioconductor-manor
|
public |
CGH Micro-Array NORmalization
|
2025-01-06 |
|
dockq
|
public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
|
2025-01-06 |
|
bioconductor-glad
|
public |
Gain and Loss Analysis of DNA
|
2025-01-06 |
|
pyfastx
|
public |
pyfastx is a python module for fast random
access to sequences from plain and gzipped
FASTA/Q file
|
2025-01-06 |
|
longcallr_nn
|
public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
|
2025-01-06 |
|
bioconductor-spatiallibd
|
public |
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
|
2025-01-05 |
|
bioconductor-visse
|
public |
Visualising Set Enrichment Analysis Results
|
2025-01-05 |
|
bioconductor-splicewiz
|
public |
interactive analysis and visualization of alternative splicing in R
|
2025-01-05 |
|
phyclone
|
public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
|
2025-01-05 |
|
bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-01-05 |
|
bioconductor-primirtss
|
public |
Prediction of pri-miRNA Transcription Start Site
|
2025-01-05 |
|
bioconductor-scfeatures
|
public |
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction
|
2025-01-05 |
|
bioconductor-moonlight2r
|
public |
Identify oncogenes and tumor suppressor genes from omics data
|
2025-01-05 |
|
bioconductor-epimutacions
|
public |
Robust outlier identification for DNA methylation data
|
2025-01-05 |
|
bioconductor-inetgrate
|
public |
Integrates DNA methylation data with gene expression in a single gene network
|
2025-01-05 |
|
bioconductor-mosdef
|
public |
MOSt frequently used and useful Differential Expression Functions
|
2025-01-05 |
|
bioconductor-methylcc
|
public |
Estimate the cell composition of whole blood in DNA methylation samples
|
2025-01-05 |
|
bioconductor-mafdb.exac.r1.0.grch38
|
public |
Minor allele frequency data from ExAC release 1.0 for GRCh38
|
2025-01-05 |
|
bioconductor-epiregulon.extra
|
public |
Companion package to epiregulon with additional plotting, differential and graph functions
|
2025-01-05 |
|
bioconductor-cbnplot
|
public |
plot bayesian network inferred from gene expression data based on enrichment analysis results
|
2025-01-05 |
|
bioconductor-mageckflute
|
public |
Integrative Analysis Pipeline for Pooled CRISPR Functional Genetic Screens
|
2025-01-05 |
|
bioconductor-mastr
|
public |
Markers Automated Screening Tool in R
|
2025-01-05 |
|
bioconductor-hibed
|
public |
HiBED
|
2025-01-05 |
|
bioconductor-blacksheepr
|
public |
Outlier Analysis for pairwise differential comparison
|
2025-01-05 |
|
bioconductor-isoformswitchanalyzer
|
public |
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
|
2025-01-05 |
|
bioconductor-spatzie
|
public |
Identification of enriched motif pairs from chromatin interaction data
|
2025-01-05 |
|
bioconductor-flowsorted.cordbloodcombined.450k
|
public |
Illumina 450k/EPIC data on FACS and MACS umbilical blood cells
|
2025-01-05 |
|
bioconductor-merfishdata
|
public |
Collection of public MERFISH datasets
|
2025-01-05 |
