Process raw haplotagging data, from raw sequences to phased haplotypes.
Harpy is a command-line tool to easily process haplotag or 10x linked-read data. It uses Snakemake under the hood to execute different workflows (quality control, trimming, alignment, variant calling, phasing, etc.), but the user is rarely, if ever, exposed to Snakemake directly. With an emphasis on user-friendliness, parallelization, transparency, and reproducibility, Harpy aims to quickly handle data processing so that you can focus more on analyzing your data.
