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pretextgraph

Community

Embeds bedgraph data into Pretext contact maps.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::pretextgraph

Usage Tracking

0.0.9
0.0.8
0.0.7
0.0.6
0.0.5
5 / 8 versions selected
Total downloads: 0

Description

This is a tool for converting data from a bedgraph format and embedding into a Hi-C contact map in the Pretext format. The graph data can then be displayed alongside the contact map using the PretextView desktop software (https://github.com/wtsi-hpag/PretextView). See https://github.com/wtsi-hpag/PretextMap for how to generate Pretext contact maps, or search for pretextmap on bioconda.

About

Summary

Embeds bedgraph data into Pretext contact maps.

Information Last Updated

Apr 22, 2025 at 15:29

License

MIT

Total Downloads

17.8K

Platforms

Linux 64 Version: 0.0.9
macOS 64 Version: 0.0.9