bioconda / packages / bioconductor-trigger 1.34.0

Transcriptional Regulatory Inference from Genetics of Gene ExpRession

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.34.0
  • osx-64  v1.34.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-trigger
conda install -c bioconda/label/gcc7 bioconductor-trigger
conda install -c bioconda/label/cf201901 bioconductor-trigger

Description

This R package provides tools for the statistical analysis of integrative genomic data that involve some combination of: genotypes, high-dimensional intermediate traits (e.g., gene expression, protein abundance), and higher-order traits (phenotypes). The package includes functions to: (1) construct global linkage maps between genetic markers and gene expression; (2) analyze multiple-locus linkage (epistasis) for gene expression; (3) quantify the proportion of genome-wide variation explained by each locus and identify eQTL hotspots; (4) estimate pair-wise causal gene regulatory probabilities and construct gene regulatory networks; and (5) identify causal genes for a quantitative trait of interest.

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