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bioconda / packages / bioconductor-doppelgangr 1.30.0

Identify likely duplicate samples from genomic or meta-data

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.8.0
  • osx-64 v1.8.0
  • noarch v1.30.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-doppelgangr
conda install bioconda/label/cf201901::bioconductor-doppelgangr
conda install bioconda/label/gcc7::bioconductor-doppelgangr

Description

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).


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