CMD + K

bioconductor-fastqcleaner

Community

A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-fastqcleaner

Usage Tracking

1.24.0
1.20.0
1.18.0
1.16.0
1.12.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.

About

Summary

A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files

Last Updated

Dec 22, 2024 at 02:50

License

MIT + file LICENSE

Total Downloads

32.9K

Supported Platforms

linux-64
macOS-64
linux-aarch64