bioconda / packages / bioconductor-fastqcleaner 1.6.0

A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.0
  • osx-64  v1.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-fastqcleaner
conda install -c bioconda/label/gcc7 bioconductor-fastqcleaner


An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.

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