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bioconductor-glmsparsenet

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Network Centrality Metrics for Elastic-Net Regularized Models

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-glmsparsenet

Usage Tracking

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Downloads (Last 6 months): 0

Description

glmSparseNet is an R-package that generalizes sparse regression models when the features (e.g. genes) have a graph structure (e.g. protein-protein interactions), by including network-based regularizers. glmSparseNet uses the glmnet R-package, by including centrality measures of the network as penalty weights in the regularization. The current version implements regularization based on node degree, i.e. the strength and/or number of its associated edges, either by promoting hubs in the solution or orphan genes in the solution. All the glmnet distribution families are supported, namely "gaussian", "poisson", "binomial", "multinomial", "cox", and "mgaussian".

About

Summary

Network Centrality Metrics for Elastic-Net Regularized Models

Last Updated

Dec 30, 2024 at 22:36

License

GPL-3

Total Downloads

22.3K

Supported Platforms

noarch