bioconda / packages / bioconductor-rcas 1.20.0

RNA Centric Annotation System

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.0
  • osx-64  v1.5.4
  • noarch  v1.20.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-rcas
conda install -c bioconda/label/gcc7 bioconductor-rcas
conda install -c bioconda/label/cf201901 bioconductor-rcas

Description

RCAS is an R/Bioconductor package designed as a generic reporting tool for the functional analysis of transcriptome-wide regions of interest detected by high-throughput experiments. Such transcriptomic regions could be, for instance, signal peaks detected by CLIP-Seq analysis for protein-RNA interaction sites, RNA modification sites (alias the epitranscriptome), CAGE-tag locations, or any other collection of query regions at the level of the transcriptome. RCAS produces in-depth annotation summaries and coverage profiles based on the distribution of the query regions with respect to transcript features (exons, introns, 5'/3' UTR regions, exon-intron boundaries, promoter regions). Moreover, RCAS can carry out functional enrichment analyses and discriminative motif discovery.


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