FASTQ input and manipulation
conda install bioconda::bioconductor-shortreadconda install bioconda/label/cf201901::bioconductor-shortreadconda install bioconda/label/gcc7::bioconductor-shortread
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.