bioconda / packages / bioconductor-paa 1.28.0

PAA (Protein Array Analyzer)

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.28.0
  • osx-64  v1.28.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-paa
conda install -c bioconda/label/gcc7 bioconductor-paa

Description

PAA imports single color (protein) microarray data that has been saved in gpr file format - esp. ProtoArray data. After preprocessing (background correction, batch filtering, normalization) univariate feature preselection is performed (e.g., using the "minimum M statistic" approach - hereinafter referred to as "mMs"). Subsequently, a multivariate feature selection is conducted to discover biomarker candidates. Therefore, either a frequency-based backwards elimination aproach or ensemble feature selection can be used. PAA provides a complete toolbox of analysis tools including several different plots for results examination and evaluation.


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