bioconda / packages / bioconductor-edge 2.20.0

Extraction of Differential Gene Expression

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.20.0
  • osx-64  v2.20.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-edge
conda install -c bioconda/label/gcc7 bioconductor-edge

Description

The edge package implements methods for carrying out differential expression analyses of genome-wide gene expression studies. Significance testing using the optimal discovery procedure and generalized likelihood ratio tests (equivalent to F-tests and t-tests) are implemented for general study designs. Special functions are available to facilitate the analysis of common study designs, including time course experiments. Other packages such as snm, sva, and qvalue are integrated in edge to provide a wide range of tools for gene expression analysis.

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