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bioconductor-outsplice

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Comparison of Splicing Events between Tumor and Normal Samples

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-outsplice

Usage Tracking

1.6.0
1.2.0
1.0.0
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Downloads (Last 6 months): 0

Description

An easy to use tool that can compare splicing events in tumor and normal tissue samples using either a user generated matrix, or data from The Cancer Genome Atlas (TCGA). This package generates a matrix of splicing outliers that are significantly over or underexpressed in tumors samples compared to normal denoted by chromosome location. The package also will calculate the splicing burden in each tumor and characterize the types of splicing events that occur.

About

Summary

Comparison of Splicing Events between Tumor and Normal Samples

Last Updated

Dec 30, 2024 at 21:46

License

GPL-2

Total Downloads

2.9K

Supported Platforms

noarch