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bioconductor-curatedtcgadata
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public |
Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
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2025-01-01 |
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bioconductor-mcseadata
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public |
Data package for mCSEA package
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2025-01-01 |
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bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19
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public |
An annotation package for Illumina's EPIC methylation arrays.
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2025-01-01 |
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bioconductor-shinymethyl
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public |
Interactive visualization for Illumina methylation arrays
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2025-01-01 |
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bioconductor-flowsorted.cordbloodnorway.450k
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public |
Illumina HumanMethylation data on sorted cord blood cell populations
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2025-01-01 |
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bioconductor-flowsorted.blood.450k
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public |
Illumina HumanMethylation data on sorted blood cell populations
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2025-01-01 |
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bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
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public |
Annotation for Illumina's 450k methylation arrays
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2025-01-01 |
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bioconductor-illuminahumanmethylation450kmanifest
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public |
Manifest for Illumina's 450k array data
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2025-01-01 |
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bioconductor-methylclockdata
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public |
Data for methylclock package
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2025-01-01 |
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bioconductor-precisetad
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public |
preciseTAD: A machine learning framework for precise TAD boundary prediction
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2025-01-01 |
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bioconductor-prolocgui
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public |
Interactive visualisation of spatial proteomics data
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2025-01-01 |
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bioconductor-sgcp
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public |
SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networks
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2025-01-01 |
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bioconductor-gmicr
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public |
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)
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2025-01-01 |
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bioconductor-categorycompare
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public |
Meta-analysis of high-throughput experiments using feature annotations
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2025-01-01 |
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bioconductor-attract
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public |
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
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2025-01-01 |
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bioconductor-cleanuprnaseq
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public |
Detect and Correct Genomic DNA Contamination in RNA-seq Data
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2025-01-01 |
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bioconductor-vasp
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public |
Quantification and Visualization of Variations of Splicing in Population
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2025-01-01 |
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r-cate
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public |
Provides several methods for factor analysis in high dimension (both n,p >> 1) and methods to adjust for possible confounders in multiple hypothesis testing.
|
2025-01-01 |
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bioconductor-omicrexposome
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public |
Exposome and omic data associatin and integration analysis
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2025-01-01 |
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bioconductor-lisaclust
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public |
lisaClust: Clustering of Local Indicators of Spatial Association
|
2025-01-01 |
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bioconductor-tidyomics
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public |
Easily install and load the tidyomics ecosystem
|
2025-01-01 |
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bioconductor-degcre
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public |
Probabilistic association of DEGs to CREs from differential data
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2025-01-01 |
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bioconductor-mariner
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public |
Mariner: Explore the Hi-Cs
|
2025-01-01 |
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bioconductor-monalisa
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public |
Binned Motif Enrichment Analysis and Visualization
|
2025-01-01 |
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bioconductor-motifmatchr
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public |
Fast Motif Matching in R
|
2025-01-01 |
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bioconductor-matrixrider
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public |
Obtain total affinity and occupancies for binding site matrices on a given sequence
|
2025-01-01 |
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bioconductor-motifstack
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public |
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
|
2024-12-31 |
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bioconductor-chromvar
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public |
Chromatin Variation Across Regions
|
2024-12-31 |
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r-deconstructsigs
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public |
Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.
|
2024-12-31 |
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bioconductor-hilda
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public |
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
|
2024-12-31 |
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bioconductor-chipcomp
|
public |
Quantitative comparison of multiple ChIP-seq datasets
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2024-12-31 |
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bioconductor-cfdnapro
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public |
cfDNAPro extracts and Visualises biological features from whole genome sequencing data of cell-free DNA
|
2024-12-31 |
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thapbi-pict
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public |
THAPBI Phytophthora ITS1 Classifier Tool (PICT).
|
2024-12-31 |
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bioconductor-katdetectr
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public |
Detection, Characterization and Visualization of Kataegis in Sequencing Data
|
2024-12-31 |
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bioconductor-codex
|
public |
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
|
2024-12-31 |
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bioconductor-bsgenome.hsapiens.ucsc.hg19.masked
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public |
Full masked genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)
|
2024-12-31 |
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bioconductor-scope
|
public |
A normalization and copy number estimation method for single-cell DNA sequencing
|
2024-12-31 |
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bioconductor-madseq
|
public |
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
|
2024-12-31 |
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bioconductor-traser
|
public |
GWAS trait-associated SNP enrichment analyses in genomic intervals
|
2024-12-31 |
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bioconductor-decomptumor2sig
|
public |
Decomposition of individual tumors into mutational signatures by signature refitting
|
2024-12-31 |
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bioconductor-bsgenome.btaurus.ucsc.bostau9.masked
|
public |
Full masked genome sequences for Bos taurus (UCSC version bosTau9)
|
2024-12-31 |
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bioconductor-bsgenome.rnorvegicus.ucsc.rn5.masked
|
public |
Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn5, Mar. 2012) and stored in Biostrings objects. The sequences are the same as in BSgenome.Rnorvegicus.UCSC.rn5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
|
2024-12-31 |
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bioconductor-fccac
|
public |
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
|
2024-12-31 |
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bioconductor-cexor
|
public |
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
|
2024-12-31 |
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bioconductor-bsgenome.btaurus.ucsc.bostau3.masked
|
public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
|
2024-12-31 |
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bioconductor-rgntx
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public |
Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity
|
2024-12-31 |
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bioconductor-regionereloaded
|
public |
RegioneReloaded: Multiple Association for Genomic Region Sets
|
2024-12-31 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro3.masked
|
public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
|
2024-12-31 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38.masked
|
public |
Full masked genomic sequences for Homo sapiens (UCSC version hg38)
|
2024-12-31 |
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bioconductor-orfhunter
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public |
Predict open reading frames in nucleotide sequences
|
2024-12-31 |
