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bioconda / packages / bioconductor-fccac 1.28.0

functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.6.0
  • osx-64 v1.6.0
  • noarch v1.28.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-fccac
conda install bioconda/label/cf201901::bioconductor-fccac
conda install bioconda/label/gcc7::bioconductor-fccac

Description

Computational evaluation of variability across DNA or RNA sequencing datasets is a crucial step in genomics, as it allows both to evaluate reproducibility of replicates, and to compare different datasets to identify potential correlations. fCCAC applies functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets. fCCAC represents a more sophisticated approach that complements Pearson correlation of genomic coverage.


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