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bioconda / packages / bioconductor-bsgenome.hsapiens.ucsc.hg19.masked 1.3.993

Full masked genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.3.993

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-bsgenome.hsapiens.ucsc.hg19.masked
conda install bioconda/label/gcc7::bioconductor-bsgenome.hsapiens.ucsc.hg19.masked

Description

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg19, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

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