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bioconductor-decomptumor2sig

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Decomposition of individual tumors into mutational signatures by signature refitting

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-decomptumor2sig

Usage Tracking

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Description

Uses quadratic programming for signature refitting, i.e., to decompose the mutation catalog from an individual tumor sample into a set of given mutational signatures (either Alexandrov-model signatures or Shiraishi-model signatures), computing weights that reflect the contributions of the signatures to the mutation load of the tumor.

About

Summary

Decomposition of individual tumors into mutational signatures by signature refitting

Last Updated

Dec 31, 2024 at 19:51

License

GPL-2

Total Downloads

21.5K

Supported Platforms

noarch