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bioconductor-bsgenome.btaurus.ucsc.bostau9.masked

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Full masked genome sequences for Bos taurus (UCSC version bosTau9)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-bsgenome.btaurus.ucsc.bostau9.masked

Usage Tracking

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Description

Full genome sequences for Bos taurus (Cow) as provided by UCSC (genome bosTau9) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

About

Summary

Full masked genome sequences for Bos taurus (UCSC version bosTau9)

Last Updated

Nov 8, 2022 at 01:27

License

Artistic-2.0

Total Downloads

1.8K

Version Downloads

1.8K

Supported Platforms

noarch