bioconda / packages / bioconductor-codex 1.14.0

A normalization and copy number variation calling procedure for whole exome DNA sequencing data. CODEX relies on the availability of multiple samples processed using the same sequencing pipeline for normalization, and does not require matched controls. The normalization model in CODEX includes terms that specifically remove biases due to GC content, exon length and targeting and amplification efficiency, and latent systemic artifacts. CODEX also includes a Poisson likelihood-based recursive segmentation procedure that explicitly models the count-based exome sequencing data.


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.12.0
  • osx-64  v1.12.0
  • noarch  v1.14.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-codex
conda install -c bioconda/label/gcc7 bioconductor-codex
conda install -c bioconda/label/cf201901 bioconductor-codex


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