bioconda / packages / bioconductor-cexor 1.28.0

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.18.0
  • osx-64  v1.18.0
  • noarch  v1.28.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-cexor
conda install -c bioconda/label/gcc7 bioconductor-cexor
conda install -c bioconda/label/cf201901 bioconductor-cexor

Description

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate (IDR) for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.

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