bioconda / packages / bioconductor-matrixrider 1.24.0

Obtain total affinity and occupancies for binding site matrices on a given sequence

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.24.0
  • osx-64  v1.24.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-matrixrider
conda install -c bioconda/label/gcc7 bioconductor-matrixrider

Description

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.


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