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bioconda / packages / bioconductor-matrixrider 1.38.0

Obtain total affinity and occupancies for binding site matrices on a given sequence

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.38.0
  • linux-64 v1.34.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-matrixrider
conda install bioconda/label/gcc7::bioconductor-matrixrider

Description

Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.

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