| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pplacer | public | Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. | 2025-08-05 |
| libgenome | public | A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats. | 2025-08-05 |
| strawc | public | Straw bound with pybind11 | 2025-08-04 |
| gocr | public | GOCR is an OCR (Optical Character Recognition) program. | 2025-08-04 |
| sentieon | public | Accelerated performance bioinformatics tools for mapping and variant calling | 2025-08-04 |
| esme_mpich_4_3_1 | public | Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support. | 2025-08-04 |
| esme_netcdf-fortran_mpich_4_3_1 | public | NetCDF-Fortran - netCDF interface for Fortran | 2025-08-04 |
| esme_netcdf-c_mpich_4_3_1 | public | NetCDF-C - netCDF interface for C | 2025-08-04 |
| esme_pnetcdf_mpich_4_3_1 | public | PnetCDF - Parallel netCDF | 2025-08-04 |
| esme_pio_mpich_4_3_1 | public | ParallelIO - High-level parallel I/O library | 2025-08-04 |
| esme_omb_mpich_4_3_1 | public | OSU Micro Benchmarks | 2025-08-04 |
| iphop | public | Predict host genus from genomes of uncultivated phages. | 2025-08-04 |
| esme_hdf5_mpich_4_3_1 | public | HDF5 - Hierarchical Data Format 5 | 2025-08-04 |
| esme_esmf_mpich_4_3_1 | public | ESMF - Earth System Modeling Framework | 2025-08-04 |
| scxmatch | public | Python implementation for single-cell cross match test, an efficient implementation of Rosenbaum's test. | 2025-08-04 |
| tracy | public | Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files | 2025-08-04 |
| rscape | public | R-scape (RNA Structural Covariation Above Phylogenetic Expectation) looks for evidence of a conserved RNA secondary structure by measuring pairwise covariations observed in an input multiple sequence alignment. | 2025-08-04 |
| sickle-trim | public | Windowed Adaptive Trimming for fastq files using quality | 2025-08-04 |
| bifrost | public | Highly parallel construction and indexing of colored and compacted de Bruijn graphs | 2025-08-04 |
| libgff | public | A simple "libraryfication" of the GFF/GTF parsing code that is used in GFFRead codebase. | 2025-08-04 |
| slow5tools | public | Toolkit for S/bLOW5 format | 2025-08-04 |
| cooltools | public | Analysis tools for genomic interaction data stored in .cool format | 2025-08-04 |
| unicycler | public | Hybrid assembly pipeline for bacterial genomes | 2025-08-04 |
| yacrd | public | Yet Another Chimeric Read Detector, with long-read mapper result as input. | 2025-08-04 |
| perl-text-balanced | public | Extract delimited text sequences from strings. | 2025-08-04 |
