bioconda / packages / bioconductor-smite 1.16.0

Significance-based Modules Integrating the Transcriptome and Epigenome

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.8.0
  • osx-64  v1.6.0
  • noarch  v1.16.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-smite
conda install -c bioconda/label/gcc7 bioconductor-smite
conda install -c bioconda/label/cf201901 bioconductor-smite

Description

This package builds on the Epimods framework which facilitates finding weighted subnetworks ("modules") on Illumina Infinium 27k arrays using the SpinGlass algorithm, as implemented in the iGraph package. We have created a class of gene centric annotations associated with p-values and effect sizes and scores from any researchers prior statistical results to find functional modules.

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