bioconda / packages / bioconductor-cogaps 3.8.0

Coordinated Gene Activity in Pattern Sets


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v3.8.0
  • osx-64  v3.8.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-cogaps
conda install -c bioconda/label/gcc7 bioconductor-cogaps


Coordinated Gene Activity in Pattern Sets (CoGAPS) implements a Bayesian MCMC matrix factorization algorithm, GAPS, and links it to gene set statistic methods to infer biological process activity. It can be used to perform sparse matrix factorization on any data, and when this data represents biomolecules, to do gene set analysis.

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