bioconda / packages / bioconductor-aggregatebiovar 1.4.0

Differential Gene Expression Analysis for Multi-subject scRNA-seq

Installers

conda install

  • noarch  v1.4.0
To install this package with conda run:
conda install -c bioconda bioconductor-aggregatebiovar

Description

For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.


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