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bioconductor-txdb.cfamiliaris.ucsc.canfam6.refgene
|
public |
Annotation package for TxDb object(s)
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2024-12-28 |
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bioconductor-txdb.mmusculus.ucsc.mm10.knowngene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-gmoviz
|
public |
Seamless visualization of complex genomic variations in GMOs and edited cell lines
|
2024-12-28 |
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bioconductor-geneattribution
|
public |
Identification of candidate genes associated with genetic variation
|
2024-12-28 |
|
r-consensustme
|
public |
ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.
|
2024-12-28 |
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bioconductor-txdb.btaurus.ucsc.bostau8.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-guitar
|
public |
Guitar
|
2024-12-28 |
|
bioconductor-homo.sapiens
|
public |
Contains the Homo.sapiens object to access data from several related annotation packages.
|
2024-12-28 |
|
bioconductor-tress
|
public |
Toolbox for mRNA epigenetics sequencing analysis
|
2024-12-28 |
|
bioconductor-hicdcplus
|
public |
Hi-C Direct Caller Plus
|
2024-12-28 |
|
bioconductor-cpvsnp
|
public |
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
|
2024-12-28 |
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bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-ivas
|
public |
Identification of genetic Variants affecting Alternative Splicing
|
2024-12-28 |
|
bioconductor-cytopipelinegui
|
public |
GUI's for visualization of flow cytometry data analysis pipelines
|
2024-12-28 |
|
bioconductor-variantannotation
|
public |
Annotation of Genetic Variants
|
2024-12-28 |
|
bioconductor-cytomds
|
public |
Low Dimensions projection of cytometry samples
|
2024-12-28 |
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bioconductor-casper
|
public |
Characterization of Alternative Splicing based on Paired-End Reads
|
2024-12-28 |
|
bioconductor-phenotest
|
public |
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
|
2024-12-28 |
|
bioconductor-genextender
|
public |
Optimized Functional Annotation Of ChIP-seq Data
|
2024-12-28 |
|
bioconductor-maftools
|
public |
Summarize, Analyze and Visualize MAF Files
|
2024-12-28 |
|
bioconductor-cytopipeline
|
public |
Automation and visualization of flow cytometry data analysis pipelines
|
2024-12-28 |
|
bioconductor-cellbarcode
|
public |
Cellular DNA Barcode Analysis toolkit
|
2024-12-28 |
|
bioconductor-flowgate
|
public |
Interactive Cytometry Gating in R
|
2024-12-28 |
|
bioconductor-flowvs
|
public |
Variance stabilization in flow cytometry (and microarrays)
|
2024-12-28 |
|
bioconductor-ggcyto
|
public |
Visualize Cytometry data with ggplot
|
2024-12-28 |
|
bioconductor-flowstats
|
public |
Statistical methods for the analysis of flow cytometry data
|
2024-12-28 |
|
r-autospill
|
public |
AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data.
|
2024-12-28 |
|
bioconductor-peacoqc
|
public |
Peak-based selection of high quality cytometry data
|
2024-12-28 |
|
control-freec
|
public |
Copy number and genotype annotation from whole genome and whole exome
sequencing data.
|
2024-12-27 |
|
bioconductor-rtracklayer
|
public |
R interface to genome annotation files and the UCSC genome browser
|
2024-12-27 |
|
bioconductor-genomicalignments
|
public |
Representation and manipulation of short genomic alignments
|
2024-12-27 |
|
bioconductor-csaw
|
public |
ChIP-Seq Analysis with Windows
|
2024-12-27 |
|
bioconductor-rhtslib
|
public |
HTSlib high-throughput sequencing library as an R package
|
2024-12-27 |
|
r-spp
|
public |
Analysis of ChIP-seq and other functional sequencing data [Kharchenko PV (2008) <DOI:10.1038/nbt.1508>].
|
2024-12-27 |
|
bioconductor-rfastp
|
public |
An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).
|
2024-12-27 |
|
bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2024-12-27 |
|
bioconductor-bamsignals
|
public |
Extract read count signals from bam files
|
2024-12-27 |
|
bioconductor-netpathminer
|
public |
NetPathMiner for Biological Network Construction, Path Mining and Visualization
|
2024-12-27 |
|
bioconductor-wavcluster
|
public |
Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data
|
2024-12-27 |
|
bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-27 |
|
bioconductor-txdb.mmusculus.ucsc.mm39.knowngene
|
public |
Annotation package for TxDb object(s)
|
2024-12-27 |
|
bioconductor-fdb.ucsc.snp135common.hg19
|
public |
makeFeatureDbFromUCSC cannot cope with this track, hence a package
|
2024-12-27 |
|
bioconductor-fdb.ucsc.snp137common.hg19
|
public |
makeFeatureDbFromUCSC cannot cope with this track, hence a package
|
2024-12-27 |
|
bioconductor-tcgautils
|
public |
TCGA utility functions for data management
|
2024-12-27 |
|
bioconductor-txdb.ggallus.ucsc.galgal4.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-27 |
|
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-27 |
|
bioconductor-annotationhubdata
|
public |
Transform public data resources into Bioconductor Data Structures
|
2024-12-27 |
|
bioconductor-txdb.mmulatta.ucsc.rhemac3.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-27 |
|
bioconductor-txdb.hsapiens.ucsc.hg38.knowngene
|
public |
Annotation package for TxDb object(s)
|
2024-12-27 |
|
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-27 |
