bioconda / packages / bioconductor-cpvsnp 1.20.0

Gene set analysis methods for SNP association p-values that lie in genes in given gene sets


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.12.0
  • osx-64  v1.10.0
  • noarch  v1.20.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-cpvsnp
conda install -c bioconda/label/gcc7 bioconductor-cpvsnp
conda install -c bioconda/label/cf201901 bioconductor-cpvsnp


Gene set analysis methods exist to combine SNP-level association p-values into gene sets, calculating a single association p-value for each gene set. This package implements two such methods that require only the calculated SNP p-values, the gene set(s) of interest, and a correlation matrix (if desired). One method (GLOSSI) requires independent SNPs and the other (VEGAS) can take into account correlation (LD) among the SNPs. Built-in plotting functions are available to help users visualize results.

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