ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.
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Summary
ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.
Last Updated
Feb 15, 2022 at 16:29
License
GPL-3
Total Downloads
4.8K
Supported Platforms