bioconda / packages / bioconductor-casper 2.22.0

Characterization of Alternative Splicing based on Paired-End Reads


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.22.0
  • osx-64  v2.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-casper
conda install -c bioconda/label/gcc7 bioconductor-casper
conda install -c bioconda/label/cf201901 bioconductor-casper


Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

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