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bioconductor-cghmcr
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public |
Find chromosome regions showing common gains/losses
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2024-12-30 |
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r-tcga2stat
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public |
Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.
|
2024-12-30 |
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bioconductor-transcriptr
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public |
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
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2024-12-30 |
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bioconductor-soggi
|
public |
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals
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2024-12-30 |
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bioconductor-bsgenome.hsapiens.ucsc.hg19
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public |
Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)
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2024-12-30 |
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bioconductor-guideseq
|
public |
GUIDE-seq and PEtag-seq analysis pipeline
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2024-12-30 |
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bioconductor-chippeakanno
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public |
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data
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2024-12-30 |
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bioconductor-methylpipe
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public |
Base resolution DNA methylation data analysis
|
2024-12-30 |
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bioconductor-gothic
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public |
Binomial test for Hi-C data analysis
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2024-12-30 |
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bioconductor-genomation
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public |
Summary, annotation and visualization of genomic data
|
2024-12-30 |
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bioconductor-regioner
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public |
Association analysis of genomic regions based on permutation tests
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2024-12-30 |
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bioconductor-bsgenome.celegans.ucsc.ce6
|
public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38
|
public |
Full genomic sequences for Homo sapiens (UCSC genome hg38)
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2024-12-30 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm3
|
public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.
|
2024-12-30 |
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bioconductor-bsgenome.mmusculus.ucsc.mm10
|
public |
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)
|
2024-12-30 |
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bioconductor-bsgenome.ecoli.ncbi.20080805
|
public |
Escherichia coli full genomes for several strains as provided by NCBI on 2008/08/05 and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-biovizbase
|
public |
Basic graphic utilities for visualization of genomic data.
|
2024-12-29 |
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bioconductor-methylkit
|
public |
DNA methylation analysis from high-throughput bisulfite sequencing results
|
2024-12-29 |
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bioconductor-qsea
|
public |
IP-seq data analysis and vizualization
|
2024-12-29 |
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bioconductor-bsgenome.hsapiens.ucsc.hg18
|
public |
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.celegans.ucsc.ce10
|
public |
No Summary
|
2024-12-29 |
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bioconductor-snplocs.hsapiens.dbsnp144.grch38
|
public |
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
|
2024-12-29 |
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bioconductor-mmdiff2
|
public |
Statistical Testing for ChIP-Seq data sets
|
2024-12-29 |
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bioconductor-methylseekr
|
public |
Segmentation of Bis-seq data
|
2024-12-29 |
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bioconductor-beat
|
public |
BEAT - BS-Seq Epimutation Analysis Toolkit
|
2024-12-29 |
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r-dpeak
|
public |
This package provides functions for fitting dPeak, a statistical framework to deconvolve ChIP-seq peaks.
|
2024-12-29 |
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bioconductor-bsgenome.drerio.ucsc.danrer7
|
public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-repitools
|
public |
Epigenomic tools
|
2024-12-29 |
|
bioconductor-bsgenome.mmusculus.ucsc.mm9
|
public |
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-crisprseek
|
public |
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
|
2024-12-29 |
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bioconductor-rgadem
|
public |
de novo motif discovery
|
2024-12-29 |
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bioconductor-hiannotator
|
public |
Functions for annotating GRanges objects
|
2024-12-29 |
|
bioconductor-rtrmui
|
public |
A shiny user interface for rTRM
|
2024-12-29 |
|
bioconductor-epivizrstandalone
|
public |
Run Epiviz Interactive Genomic Data Visualization App within R
|
2024-12-29 |
|
bioconductor-epivizr
|
public |
R Interface to epiviz web app
|
2024-12-29 |
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bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-29 |
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bioconductor-txdb.mmusculus.ucsc.mm10.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-qpgraph
|
public |
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
|
2024-12-28 |
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bioconductor-edaseq
|
public |
Exploratory Data Analysis and Normalization for RNA-Seq
|
2024-12-28 |
|
bioconductor-bumphunter
|
public |
Bump Hunter
|
2024-12-28 |
|
bioconductor-sgseq
|
public |
Splice event prediction and quantification from RNA-seq data
|
2024-12-28 |
|
bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.celegans.ucsc.ce6.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
crux-toolkit
|
public |
A cross-platform suite of analysis tools for interpreting protein mass spectrometry data
|
2024-12-28 |
|
bioconductor-txdb.drerio.ucsc.danrer10.refgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
perl-term-table
|
public |
Format a header and rows into a table
|
2024-12-28 |
|
bioconductor-splicinggraphs
|
public |
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
|
2024-12-28 |
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bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.mmusculus.ucsc.mm9.knowngene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
