bioconda / packages / bioconductor-methylkit 1.14.1

DNA methylation analysis from high-throughput bisulfite sequencing results

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.14.1
  • osx-64  v1.14.1
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-methylkit
conda install -c bioconda/label/gcc7 bioconductor-methylkit
conda install -c bioconda/label/cf201901 bioconductor-methylkit

Description

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Methylation calling can be performed directly from Bismark aligned BAM files.

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