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bioconductor-crisprseek

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Design of guide RNAs in CRISPR genome-editing systems

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-crisprseek

Usage Tracking

1.50.0
1.46.0
1.42.0
1.40.0
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Downloads (Last 6 months): 0

Description

The package encompasses functions to find potential guide RNAs for the CRISPR-based genome-editing systems including the Base Editors and the Prime Editors when supplied with target sequences as input. Users have the flexibility to filter resulting guide RNAs based on parameters such as the absence of restriction enzyme cut sites or the lack of paired guide RNAs. The package also facilitates genome-wide exploration for off-targets, offering features to score and rank off-targets, retrieve flanking sequences, and indicate whether the hits are located within exon regions. All detected guide RNAs are annotated with the cumulative scores of the top5 and topN off-targets together with the detailed information such as mismatch sites and restrictuion enzyme cut sites. The package also outputs INDELs and their frequencies for Cas9 targeted sites.

About

Summary

Design of guide RNAs in CRISPR genome-editing systems

Last Updated

Mar 2, 2026 at 23:45

License

file LICENSE

Total Downloads

37.3K

Version Downloads

25

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.20.0
macOS-64 Last supported version: 1.20.0