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bioconductor-guideseq

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GUIDE-seq and PEtag-seq analysis pipeline

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-guideseq

Usage Tracking

1.36.0
1.32.0
1.30.0
1.28.0
1.24.0
5 / 8 versions selected
Total downloads: 0

Description

The package implements GUIDE-seq and PEtag-seq analysis workflow including functions for filtering UMI and reads with low coverage, obtaining unique insertion sites (proxy of cleavage sites), estimating the locations of the insertion sites, aka, peaks, merging estimated insertion sites from plus and minus strand, and performing off target search of the extended regions around insertion sites with mismatches and indels.

About

Summary

GUIDE-seq and PEtag-seq analysis pipeline

Information Last Updated

Apr 22, 2025 at 15:28

License

GPL (>= 2)

Total Downloads

32.7K

Platforms

Linux 64 Version: 1.10.0
macOS 64 Version: 1.8.0
noarch Version: 1.36.0