bioconda / packages / bioconductor-guideseq 1.18.0

GUIDE-seq analysis pipeline

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.10.0
  • osx-64  v1.8.0
  • noarch  v1.18.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-guideseq
conda install -c bioconda/label/gcc7 bioconductor-guideseq
conda install -c bioconda/label/cf201901 bioconductor-guideseq

Description

The package implements GUIDE-seq analysis workflow including functions for obtaining unique insertion sites (proxy of cleavage sites), estimating the locations of the insertion sites, aka, peaks, merging estimated insertion sites from plus and minus strand, and performing off target search of the extended regions around insertion sites.

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