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cnv_facets
|
public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
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2025-04-22 |
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hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2025-04-22 |
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bioconductor-decontam
|
public |
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
|
2025-04-22 |
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biothings_client
|
public |
Python Client for BioThings API services.
|
2025-04-22 |
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xmatchview
|
public |
Genome sequence alignment visualization
|
2025-04-22 |
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lambda
|
public |
Lambda is a local aligner optimized for many query sequences and searches in protein space
|
2025-04-22 |
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dropletutils-scripts
|
public |
CLI scripts for the DropletUtils package
|
2025-04-22 |
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snp-pileup
|
public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
|
2025-04-22 |
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perl-math-utils
|
public |
Useful mathematical functions not in Perl
|
2025-04-22 |
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pysvmlight
|
public |
Interface to Thorsten Joachims' SVM-Light
|
2025-04-22 |
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unitas
|
public |
unitas is a convenient tool for efficient annotation of small non-coding RNA sequence datasets produced by Next Generation Sequencing.
|
2025-04-22 |
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kleborate
|
public |
Kleborate: a tool for typing and screening pathogen genome assemblies
|
2025-04-22 |
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kalign2
|
public |
Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences.
|
2025-04-22 |
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cat
|
public |
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
|
2025-04-22 |
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seqmap
|
public |
SeqMap is a tool for mapping large amount of oligonucleotide to the genome.
|
2025-04-22 |
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tmalign
|
public |
TM-align sequence-order independent protein structure alignment.
|
2025-04-22 |
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svmlight
|
public |
SVMLight Library by Thorsten Joachim
|
2025-04-22 |
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hiddendomains
|
public |
hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains.
|
2025-04-22 |
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sparcc
|
public |
SparCC is a python module for computing correlations in compositional data (16S, metagenomics, etc).
|
2025-04-22 |
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cromwell-tools
|
public |
Utilities for interacting with the Cromwell workflow engine
|
2025-04-22 |
|
r-cate
|
public |
Provides several methods for factor analysis in high dimension (both n,p >> 1) and methods to adjust for possible confounders in multiple hypothesis testing.
|
2025-04-22 |
|
snver
|
public |
SNVer is a statistical tool for calling common and rare variants in analysis of pool or individual next-generation sequencing data.
It reports one single overall p-value for evaluating the significance of a candidate locus being a variant, based on which multiplicity control can be obtained.
Loci with any (low) coverage can be tested and depth of coverage will be quantitatively factored into final significance calculation.
SNVer runs very fast, making it feasible for analysis of whole-exome sequencing data, or even whole-genome sequencing data.
|
2025-04-22 |
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counterr
|
public |
Counterr is a light-weight command line tool that computes errors in sequencing data by comparing the reads to a reference genome.
|
2025-04-22 |
|
kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-04-22 |
|
microhapdb
|
public |
Portable database of microhaplotype marker and allele frequency data.
|
2025-04-22 |
