bioconda / packages / bioconductor-decontam 1.14.0

Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.14.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-decontam
conda install -c bioconda/label/gcc7 bioconductor-decontam
conda install -c bioconda/label/cf201901 bioconductor-decontam

Description

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.


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