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bioconda / packages / bioconductor-decontam 1.22.0

Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.22.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-decontam
conda install bioconda/label/cf201901::bioconductor-decontam
conda install bioconda/label/gcc7::bioconductor-decontam

Description

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.


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