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bioconductor-decontam

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Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-decontam

Usage Tracking

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Description

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

About

Summary

Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

Last Updated

Dec 14, 2024 at 15:41

License

Artistic-2.0

Total Downloads

193.6K

Supported Platforms

noarch