bioconductor-decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
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Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.
Summary
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Last Updated
Dec 14, 2024 at 15:41
License
Artistic-2.0
Total Downloads
193.6K
Supported Platforms