bioconda / packages / bioconductor-genomation 1.20.0

Summary, annotation and visualization of genomic data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.20.0
  • osx-64  v1.20.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-genomation
conda install -c bioconda/label/gcc7 bioconductor-genomation
conda install -c bioconda/label/cf201901 bioconductor-genomation

Description

A package for summary and annotation of genomic intervals. Users can visualize and quantify genomic intervals over pre-defined functional regions, such as promoters, exons, introns, etc. The genomic intervals represent regions with a defined chromosome position, which may be associated with a score, such as aligned reads from HT-seq experiments, TF binding sites, methylation scores, etc. The package can use any tabular genomic feature data as long as it has minimal information on the locations of genomic intervals. In addition, It can use BAM or BigWig files as input.

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