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bioconda / packages / bioconductor-gothic 1.38.0

Binomial test for Hi-C data analysis

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.16.0
  • osx-64 v1.16.0
  • noarch v1.38.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-gothic
conda install bioconda/label/cf201901::bioconductor-gothic
conda install bioconda/label/gcc7::bioconductor-gothic

Description

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.


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