bioconda / packages / bioconductor-gothic 1.24.0

Binomial test for Hi-C data analysis

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.16.0
  • osx-64  v1.16.0
  • noarch  v1.24.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-gothic
conda install -c bioconda/label/gcc7 bioconductor-gothic
conda install -c bioconda/label/cf201901 bioconductor-gothic

Description

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.

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