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bioconductor-biocneighbors
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public |
Nearest Neighbor Detection for Bioconductor Packages
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2024-12-15 |
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bioconductor-lfa
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public |
Logistic Factor Analysis for Categorical Data
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2024-12-15 |
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bioconductor-linnorm
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public |
Linear model and normality based normalization and transformation method (Linnorm)
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2024-12-15 |
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perl-crypt-openssl-rsa
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public |
RSA encoding and decoding, using the openSSL libraries
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2024-12-15 |
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bioconductor-veloviz
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public |
VeloViz: RNA-velocity informed 2D embeddings for visualizing cell state trajectories
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2024-12-15 |
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bioconductor-alevinqc
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public |
Generate QC Reports For Alevin Output
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2024-12-15 |
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sibeliaz
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public |
A fast whole-genome aligner based on de Bruijn graphs.
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2024-12-15 |
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bioconductor-redisparam
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public |
Provide a 'redis' back-end for BiocParallel
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2024-12-15 |
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bioconductor-oscope
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public |
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
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2024-12-15 |
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bioconductor-emdomics
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public |
Earth Mover's Distance for Differential Analysis of Genomics Data
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2024-12-15 |
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bioconductor-scbubbletree
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public |
Quantitative visual exploration of scRNA-seq data
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2024-12-15 |
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bioconductor-screcover
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public |
scRecover for imputation of single-cell RNA-seq data
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2024-12-15 |
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bioconductor-alphabeta
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public |
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
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2024-12-15 |
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bioconductor-bus
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public |
Gene network reconstruction
|
2024-12-15 |
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bioconductor-pcan
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public |
Phenotype Consensus ANalysis (PCAN)
|
2024-12-15 |
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hmmcopy
|
public |
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
|
2024-12-15 |
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bioconductor-depinfer
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public |
Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and drug-protein profiling
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2024-12-15 |
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splicemap
|
public |
Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.
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2024-12-15 |
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tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
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2024-12-15 |
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bioconductor-scthi
|
public |
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
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2024-12-15 |
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bioconductor-scshapes
|
public |
A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data
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2024-12-15 |
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bioconductor-dcgsa
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public |
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
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2024-12-15 |
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bioconductor-tpp2d
|
public |
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
|
2024-12-15 |
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vadr
|
public |
Viral Annotation DefineR - classification and annotation of viral sequences based on RefSeq annotation
|
2024-12-15 |
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nohuman
|
public |
Remove human reads from a sequencing run
|
2024-12-15 |
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bioconductor-decoupler
|
public |
decoupleR: Ensemble of computational methods to infer biological activities from omics data
|
2024-12-15 |
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bioconductor-biodb
|
public |
biodb, a library and a development framework for connecting to chemical and biological databases
|
2024-12-15 |
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bioconductor-mixomics
|
public |
Omics Data Integration Project
|
2024-12-15 |
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phyloacc
|
public |
Bayesian estimation of substitution rate shifts in non-coding regions
|
2024-12-15 |
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bioconductor-magrene
|
public |
Motif Analysis In Gene Regulatory Networks
|
2024-12-15 |
|
bioconductor-brendadb
|
public |
The BRENDA Enzyme Database
|
2024-12-15 |
|
bioconductor-pengls
|
public |
Fit Penalised Generalised Least Squares models
|
2024-12-15 |
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bioconductor-abseqr
|
public |
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
|
2024-12-15 |
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ganon
|
public |
ganon2 classifies genomic sequences against large sets of references efficiently,
|
2024-12-15 |
|
metabinkit
|
public |
Set of programs to perform taxonomic binning.
|
2024-12-15 |
|
repeatscout
|
public |
De novo identification of repeat families in large genomes.
|
2024-12-15 |
|
bioconductor-scfa
|
public |
SCFA: Subtyping via Consensus Factor Analysis
|
2024-12-15 |
|
hs-blastn
|
public |
hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.
|
2024-12-14 |
|
bioconductor-cytoglmm
|
public |
Conditional Differential Analysis for Flow and Mass Cytometry Experiments
|
2024-12-14 |
|
localhgt
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2024-12-14 |
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bioconductor-synlet
|
public |
Hits Selection for Synthetic Lethal RNAi Screen Data
|
2024-12-14 |
|
perl-par-packer
|
public |
No Summary
|
2024-12-14 |
|
bioconductor-desingle
|
public |
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
|
2024-12-14 |
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bioconductor-compass
|
public |
Combinatorial Polyfunctionality Analysis of Single Cells
|
2024-12-14 |
|
bioconductor-nparc
|
public |
Non-parametric analysis of response curves for thermal proteome profiling experiments
|
2024-12-14 |
|
pytrimal
|
public |
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
|
2024-12-14 |
|
psascan
|
public |
A parallel external memory suffix array construction algorithm
|
2024-12-14 |
|
bioconductor-kinswingr
|
public |
KinSwingR: network-based kinase activity prediction
|
2024-12-14 |
|
bioconductor-mbcb
|
public |
MBCB (Model-based Background Correction for Beadarray)
|
2024-12-14 |
|
pyopal
|
public |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
|
2024-12-14 |
