bioconda / packages / bioconductor-oscope 1.18.0

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.10.0
  • osx-64  v1.10.0
  • noarch  v1.18.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-oscope
conda install -c bioconda/label/gcc7 bioconductor-oscope
conda install -c bioconda/label/cf201901 bioconductor-oscope

Description

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

PRIVACY POLICY  |  EULA (Anaconda Cloud v2.33.29) © 2020 Anaconda, Inc. All Rights Reserved.