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bioconductor-synlet

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Hits Selection for Synthetic Lethal RNAi Screen Data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-synlet

Usage Tracking

2.6.0
2.2.0
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1.28.0
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Total downloads: 0

Description

Select hits from synthetic lethal RNAi screen data. For example, there are two identical celllines except one gene is knocked-down in one cellline. The interest is to find genes that lead to stronger lethal effect when they are knocked-down further by siRNA. Quality control and various visualisation tools are implemented. Four different algorithms could be used to pick up the interesting hits. This package is designed based on 384 wells plates, but may apply to other platforms with proper configuration.

About

Summary

Hits Selection for Synthetic Lethal RNAi Screen Data

Information Last Updated

Apr 22, 2025 at 15:28

License

GPL-3

Total Downloads

36.4K

Platforms

Linux 64 Version: 1.10.0
macOS 64 Version: 1.10.0
noarch Version: 2.6.0