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splicemap

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Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::splicemap

Usage Tracking

3.3.5.2
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About

Summary

Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.

Last Updated

Jun 1, 2018 at 20:38

License

file

Total Downloads

7.0K

Supported Platforms

linux-64
macOS-64
linux-aarch64
macOS-arm64