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perl-ipc-sharelite
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public |
Lightweight interface to shared memory
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2024-12-15 |
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colorid_bv
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public |
Experiments with using BIGSI data structure for metagenomic and QC applications
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2024-12-15 |
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haslr
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public |
A fast tool for hybrid genome assembly of long and short reads
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2024-12-15 |
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bioconductor-nupop
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public |
An R package for nucleosome positioning prediction
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2024-12-15 |
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bioconductor-santa
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public |
Spatial Analysis of Network Associations
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2024-12-15 |
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pyslow5
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public |
slow5lib Python binding
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2024-12-15 |
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mgems
|
public |
mGEMS - sequencing data binning based on probabilistic classification
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2024-12-15 |
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kissplice
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public |
A local transcriptome assembler for SNPs, indels and AS events
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2024-12-15 |
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fastx_toolkit
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public |
No Summary
|
2024-12-15 |
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r-phylomeasures
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public |
Given a phylogenetic tree T and an assemblage S of species represented as a subset of tips in T, we want to compute a measure of the diversity of the species in S with respect to T. The current package offers efficient algorithms that can process large phylogenetic data for several such measures. Most importantly, the package includes algorithms for computing efficiently the standardized versions of phylogenetic measures and their p-values, which are essential for null model comparisons. Among other functions, the package provides efficient computation of richness-standardized versions for indices such as the net relatedness index (NRI), nearest taxon index (NTI), phylogenetic diversity index (PDI), and the corresponding indices of two-sample measures. The package also introduces a new single-sample measure, the Core Ancestor Cost (CAC); the package provides functions for computing the value and the standardised index of the CAC and, more than that, there is an extra function available that can compute exactly any statistical moment of the measure. The package supports computations under different null models, including abundance-weighted models.
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2024-12-15 |
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ancestry_hmm
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public |
Software for local ancestry inference
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2024-12-15 |
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bioconductor-biocneighbors
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public |
Nearest Neighbor Detection for Bioconductor Packages
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2024-12-15 |
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bioconductor-lfa
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public |
Logistic Factor Analysis for Categorical Data
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2024-12-15 |
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bioconductor-linnorm
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public |
Linear model and normality based normalization and transformation method (Linnorm)
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2024-12-15 |
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perl-crypt-openssl-rsa
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public |
RSA encoding and decoding, using the openSSL libraries
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2024-12-15 |
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bioconductor-veloviz
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public |
VeloViz: RNA-velocity informed 2D embeddings for visualizing cell state trajectories
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2024-12-15 |
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bioconductor-alevinqc
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public |
Generate QC Reports For Alevin Output
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2024-12-15 |
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sibeliaz
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public |
A fast whole-genome aligner based on de Bruijn graphs.
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2024-12-15 |
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bioconductor-redisparam
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public |
Provide a 'redis' back-end for BiocParallel
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2024-12-15 |
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bioconductor-oscope
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public |
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
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2024-12-15 |
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bioconductor-emdomics
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public |
Earth Mover's Distance for Differential Analysis of Genomics Data
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2024-12-15 |
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bioconductor-scbubbletree
|
public |
Quantitative visual exploration of scRNA-seq data
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2024-12-15 |
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bioconductor-screcover
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public |
scRecover for imputation of single-cell RNA-seq data
|
2024-12-15 |
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bioconductor-alphabeta
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public |
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
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2024-12-15 |
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bioconductor-bus
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public |
Gene network reconstruction
|
2024-12-15 |
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bioconductor-pcan
|
public |
Phenotype Consensus ANalysis (PCAN)
|
2024-12-15 |
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hmmcopy
|
public |
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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2024-12-15 |
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bioconductor-depinfer
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public |
Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and drug-protein profiling
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2024-12-15 |
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splicemap
|
public |
Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.
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2024-12-15 |
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tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
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2024-12-15 |
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bioconductor-scthi
|
public |
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
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2024-12-15 |
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bioconductor-scshapes
|
public |
A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data
|
2024-12-15 |
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bioconductor-dcgsa
|
public |
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
|
2024-12-15 |
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bioconductor-tpp2d
|
public |
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
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2024-12-15 |
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vadr
|
public |
Viral Annotation DefineR - classification and annotation of viral sequences based on RefSeq annotation
|
2024-12-15 |
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nohuman
|
public |
Remove human reads from a sequencing run
|
2024-12-15 |
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bioconductor-decoupler
|
public |
decoupleR: Ensemble of computational methods to infer biological activities from omics data
|
2024-12-15 |
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bioconductor-biodb
|
public |
biodb, a library and a development framework for connecting to chemical and biological databases
|
2024-12-15 |
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bioconductor-mixomics
|
public |
Omics Data Integration Project
|
2024-12-15 |
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phyloacc
|
public |
Bayesian estimation of substitution rate shifts in non-coding regions
|
2024-12-15 |
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bioconductor-magrene
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public |
Motif Analysis In Gene Regulatory Networks
|
2024-12-15 |
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bioconductor-brendadb
|
public |
The BRENDA Enzyme Database
|
2024-12-15 |
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bioconductor-pengls
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public |
Fit Penalised Generalised Least Squares models
|
2024-12-15 |
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bioconductor-abseqr
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public |
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
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2024-12-15 |
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ganon
|
public |
ganon2 classifies genomic sequences against large sets of references efficiently,
|
2024-12-15 |
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metabinkit
|
public |
Set of programs to perform taxonomic binning.
|
2024-12-15 |
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repeatscout
|
public |
De novo identification of repeat families in large genomes.
|
2024-12-15 |
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bioconductor-scfa
|
public |
SCFA: Subtyping via Consensus Factor Analysis
|
2024-12-15 |
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hs-blastn
|
public |
hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.
|
2024-12-14 |
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bioconductor-cytoglmm
|
public |
Conditional Differential Analysis for Flow and Mass Cytometry Experiments
|
2024-12-14 |
